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1

High-throughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and development

RANDY T. CLARK, ADAM N. FAMOSO, KEYAN ZHAO, JON E. SHAFF, ERIC J. CRAFT, CARLOS D. BUSTAMANTE, SUSAN R. MCCOUCH, DANIEL J. ANESHANSLEY, LEON V. KOCHIAN

Journal:

Plant, Cell & Environment

Year:

2012

Language:

english

File:

PDF, 2.24 MB

english, 2012

2

Mechanisms of Aluminum Tolerance in Wheat: An Investigation of Genotypic Differences in Rhizosphere pH, K⁺, and H⁺ Transport, and Root-Cell Membrane Potentials

Susan C. Miyasaka, Leon V. Kochian, Jon E. Shaff and Charles D. Foy

Journal:

PLANT PHYSIOLOGY

Year:

1989

Language:

english

File:

PDF, 1.30 MB

english, 1989

3

Aluminum-activated citrate and malate transporters from the MATE and ALMT families function independently to confer Arabidopsis aluminum tolerance

Jiping Liu, Jurandir V. Magalhaes, Jon Shaff, Leon V. Kochian

Journal:

The Plant Journal

Year:

2009

Language:

english

File:

PDF, 548 KB

english, 2009

4

A promoter-swap strategy between the AtALMT and AtMATE genes increased Arabidopsis aluminum resistance and improved carbon-use efficiency for aluminum resistance

Jiping Liu, Xiaoying Luo, Jon Shaff, Cuiyue Liang, Xiaomin Jia, Ziyan Li, Jurandir Magalhaes, Leon V. Kochian

Journal:

The Plant Journal

Year:

2012

Language:

english

File:

PDF, 562 KB

english, 2012

5

Molecular and Physiological Analysis of Al3+and H+Rhizotoxicities at Moderately Acidic Conditions

Yasufumi Kobayashi, Yuriko Kobayashi, Toshihiro Watanabe, Jon E. Shaff, Hiroyuki Ohta, Leon V. Kochian, Tadao Wagatsuma, Thomas B. Kinraide and Hiroyuki Koyama

Journal:

PLANT PHYSIOLOGY

Year:

2013

Language:

english

File:

PDF, 2.88 MB

english, 2013

6

Development, Characterization, and Application of a Cadmium-Selective Microelectrode for the Measurement of Cadmium Fluxes in Roots of Thlaspi Species and Wheat

Miguel A. Piñeros , Jon E. Shaff and Leon V. Kochian

Journal:

PLANT PHYSIOLOGY

Year:

1998

Language:

english

File:

PDF, 1.45 MB

english, 1998

7

Early Copper-Induced Leakage of K⁺ from Arabidopsis Seedlings Is Mediated by Ion Channels and Coupled to Citrate Efflux

Angus S. Murphy, William R. Eisinger, Jon E. Shaff, Leon V. Kochian and Lincoln Taiz

Journal:

PLANT PHYSIOLOGY

Year:

1999

Language:

english

File:

PDF, 1.37 MB

english, 1999

8

Ammonium Uptake by Rice Roots: III. Electrophysiology

Miao Yuan Wang, Anthony D. M. Glass, Jon E. Shaff and Leon V. Kochian

Journal:

PLANT PHYSIOLOGY

Year:

1994

Language:

english

File:

PDF, 1.05 MB

english, 1994

9

Evidence for Cotransport of Nitrate and Protons in Maize Roots: I. Effects of Nitrate on the Membrane Potential

Peter R. McClure, Leon V. Kochian, Roger M. Spanswick and Jon E. Shaff

Journal:

PLANT PHYSIOLOGY

Year:

1990

Language:

english

File:

PDF, 1.32 MB

english, 1990

10

Role of calcium and other ions in directing root hair tip growth in Limnobium stoloniferum: I. Inhibition of tip growth by aluminum

David L. Jones, Jon E. Shaff and Leon V. Kochian

Journal:

Year:

1995

Language:

english

File:

PDF, 2.14 MB

english, 1995

11

Genomic regions responsible for seminal and crown root lengths identified by 2D & 3D root system image analysis

Uga, Yusaku, Assaranurak, Ithipong, Kitomi, Yuka, Larson, Brandon G., Craft, Eric J., Shaff, Jon E., McCouch, Susan R., Kochian, Leon V.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.05 MB

english, 2018

12

Selectivity of Liquid Membrane Cadmium Microelectrodes Based on the Ionophore N,N,N′,N′-Tetrabutyl-3,6-dioxaoctanedithioamide

Miguel A. Piñeros, Jon E. Shaff, Leon V. Kochian, Eric Bakker

Journal:

Electroanalysis

Year:

1998

Language:

english

File:

PDF, 83 KB

english, 1998

13

Use of an extracellular, ion-selective, vibrating microelectrode system for the quantification of K+, H+, and Ca2+fluxes in maize roots and maize suspension cells

Leon V. Kochian, Jon E. Shaff, Wiel M. Kühtreiber, Lionel F. Jaffe, William J. Lucas

Journal:

Year:

1992

Language:

english

File:

PDF, 1.14 MB

english, 1992

14

GEOCHEM-EZ: a chemical speciation program with greater power and flexibility

Jon E. Shaff, Benjamin A. Schultz, Eric J. Craft, Randy T. Clark, Leon V. Kochian

Journal:

Year:

2010

Language:

english

File:

PDF, 447 KB

english, 2010

15

Maize ZmALMT2 is a root anion transporter that mediates constitutive root malate efflux

AYALEW LIGABA, LYZA MARON, JON SHAFF, LEON KOCHIAN, MIGUEL PIÑEROS

Journal:

Plant, Cell & Environment

Year:

2012

Language:

english

File:

PDF, 2.61 MB

english, 2012

16

Evidence for Cotransport of Nitrate and Protons in Maize Roots: II. Measurement of NO₃⁻ and H⁺ Fluxes with Ion-Selective Microelectrodes

Peter R. McClure, Leon V. Kochian, Roger M. Spanswick and Jon E. Shaff

Journal:

PLANT PHYSIOLOGY

Year:

1990

Language:

english

File:

PDF, 790 KB

english, 1990

17

Direct Measurement of 59Fe-Labeled Fe²⁺ Influx in Roots of Pea Using a Chelator Buffer System to Control Free Fe²⁺ in Solution

Tama C. Fox, Jon E. Shaff, Michael A. Grusak, Wendell A. Norvell, Yona Chen, Rufus L. Chaney and Leon V. Kochian

Journal:

PLANT PHYSIOLOGY

Year:

1996

Language:

english

File:

PDF, 1.34 MB

english, 1996

18

Induction of iron(III) and copper(II) reduction in pea (Pisum sativum L.) roots by Fe and Cu status: Does the root-cell plasmalemma Fe(III)-chelate reductase perform a general role in regulating cation uptake?

Ross M. Welch, Wendell A. Norvell, Stephen C. Schaefer, Jon E. Shaff and Leon V. Kochian

Journal:

Year:

1993

Language:

english

File:

PDF, 1.84 MB

english, 1993

19

Aluminum Toxicity in Roots: Correlation among Ionic Currents, Ion Fluxes, and Root Elongation in Aluminum-Sensitive and Aluminum-Tolerant Wheat Cultivars

Peter R. Ryan, Jon E. Shaff and Leon V. Kochian

Journal:

PLANT PHYSIOLOGY

Year:

1992

Language:

english

File:

PDF, 1.18 MB

english, 1992

20

Loss-of-function mutation of the calcium sensor CBL1 increases aluminum sensitivity in Arabidopsis

Ligaba-Osena, Ayalew, Fei, Zhangjun, Liu, Jiping, Xu, Yimin, Shaff, Jon, Lee, Sung-Chul, Luan, Sheng, Kudla, Jörg, Kochian, Leon, Piñeros, Miguel

Journal:

New Phytologist

Year:

2017

Language:

english

File:

PDF, 694 KB

english, 2017

21

Two functionally distinct members of the MATE (multi-drug and toxic compound extrusion) family of transporters potentially underlie two major aluminum tolerance QTLs in maize

Lyza G. Maron, Miguel A. Piñeros, Claudia T. Guimarães, Jurandir V. Magalhaes, Jennifer K. Pleiman, Chuanzao Mao, Jon Shaff, Silvia N.J. Belicuas, Leon V. Kochian

Journal:

The Plant Journal

Year:

2010

Language:

english

File:

PDF, 2.69 MB

english, 2010

22

Identification and Characterization of Aluminum Tolerance Loci in Arabidopsis (Landsberg erecta × Columbia) by Quantitative Trait Locus Mapping. A Physiologically Simple but Genetically Complex Trait

Owen A. Hoekenga, Todd J. Vision, Jon E. Shaff, Antonio J. Monforte, Gung Pyo Lee, Stephen H. Howell and Leon V. Kochian

Journal:

PLANT PHYSIOLOGY

Year:

2003

Language:

english

File:

PDF, 2.08 MB

english, 2003

23

Adaption of roots to nitrogen deficiency revealed by 3-D quantification and proteomic analysis

Qin, Lu, Walk, Thomas C, Han, Peipei, Chen, Liyu, Zhang, Sheng, Li, Yinshui, Hu, Xiaojia, Xie, Lihua, Yang, Yong, Liu, Jiping, Lu, Xing, Yu, Changbing, Tian, Jiang, Shaff, Jon E, Kochian, Leon Vincent

Journal:

PLANT PHYSIOLOGY

Year:

2018

Language:

english

File:

PDF, 2.50 MB

english, 2018

24

A gene in the multidrug and toxic compound extrusion (MATE) family confers aluminum tolerance in sorghum

Magalhaes, Jurandir V, Liu, Jiping, Guimarães, Claudia T, Lana, Ubiraci G P, Alves, Vera M C, Wang, Yi-Hong, Schaffert, Robert E, Hoekenga, Owen A, Piñeros, Miguel A, Shaff, Jon E

Journal:

Nature Genetics

Year:

2007

Language:

english

File:

PDF, 353 KB

english, 2007

25

Aluminum Resistance in Maize Cannot Be Solely Explained by Root Organic Acid Exudation. A Comparative Physiological Study

Miguel A. Piñeros , Jon E. Shaff, Holly S. Manslank, Vera M. Carvalho Alves and Leon V. Kochian

Journal:

PLANT PHYSIOLOGY

Year:

2005

Language:

english

File:

PDF, 2.04 MB

english, 2005

26

Evolving technologies for growing, imaging and analyzing 3D root system architecture of crop plants

Piñeros, Miguel A., Larson, Brandon G., Shaff, Jon E., Schneider, David J., Falcão, Alexandre Xavier, Yuan, Lixing, Clark, Randy T., Craft, Eric J., Davis, Tyler W., Pradier, Pierre-Luc, Shaw, Nathana

Journal:

Journal of Integrative Plant Biology

Year:

2016

Language:

english

File:

PDF, 5.03 MB

english, 2016

27

High Affinity K⁺ Uptake in Maize Roots: A Lack of Coupling with H⁺ Efflux

Leon V. Kochian, Jon E. Shaff and William J. Lucas

Journal:

PLANT PHYSIOLOGY

Year:

1989

Language:

english

File:

PDF, 1.59 MB

english, 1989

28

Exploiting sorghum genetic diversity for enhanced aluminum tolerance: Allele mining based on the AltSB locus

Hufnagel, Barbara, Guimaraes, Claudia T., Craft, Eric J., Shaff, Jon E., Schaffert, Robert E., Kochian, Leon V., Magalhaes, Jurandir V.

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 2.58 MB

english, 2018

29

Role of calcium and other ions in directing root hair tip growth inLimnobium stoloniferum

David L. Jones, Jon E. Shaff, Leon V. Kochian

Journal:

Year:

1995

Language:

english

File:

PDF, 1.71 MB

english, 1995

30

Induction of iron(III) and copper(II) reduction in pea (Pisum sativumL.) roots by Fe and Cu status: Does the root-cell plasmalemma Fe(III)-chelate reductase perform a general role in regulating cation uptake?

Ross M. Welch, Wendell A. Norvell, Stephen C. Schaefer, Jon E. Shaff, Leon V. Kochian

Journal:

Year:

1993

Language:

english

File:

PDF, 2.70 MB

english, 1993

31

Low pH, Aluminum, and Phosphorus Coordinately Regulate Malate Exudation through GmALMT1 to Improve Soybean Adaptation to Acid Soils

Cuiyue Liang, Miguel A. Piñeros, Jiang Tian, Zhufang Yao, Lili Sun, Jiping Liu, Jon Shaff, Alison Coluccio, Leon V. Kochian and Hong Liao

Journal:

PLANT PHYSIOLOGY

Year:

2013

Language:

english

File:

PDF, 2.85 MB

english, 2013

32

Reactive Oxygen Species || Phosphorus and Aluminum Interactions in Soybean in Relation to Aluminum Tolerance. Exudation of Specific Organic Acids from Different Regions of the Intact Root System

Hong Liao, Huiyan Wan, Jon Shaff, Xiurong Wang, Xiaolong Yan and Leon V. Kochian

Journal:

PLANT PHYSIOLOGY

Year:

2006

Language:

english

File:

PDF, 2.85 MB

english, 2006

33

Development of a Novel Aluminum Tolerance Phenotyping Platform Used for Comparisons of Cereal Aluminum Tolerance and Investigations into Rice Aluminum Tolerance Mechanisms

Adam N. Famoso, Randy T. Clark, Jon E. Shaff, Eric Craft, Susan R. McCouch and Leon V. Kochian

Journal:

PLANT PHYSIOLOGY

Year:

2010

Language:

english

File:

PDF, 2.53 MB

english, 2010

34

Characterization of AtALMT1 Expression in Aluminum-Inducible Malate Release and Its Role for Rhizotoxic Stress Tolerance in Arabidopsis

Yuriko Kobayashi, Owen A. Hoekenga, Hirotaka Itoh, Midori Nakashima, Shoichiro Saito, Jon E. Shaff, Lyza G. Maron, Miguel A. Piñeros, Leon V. Kochian and Hiroyuki Koyama

Journal:

PLANT PHYSIOLOGY

Year:

2007

Language:

english

File:

PDF, 2.11 MB

english, 2007

35

Use of an extracellular, ion-selective, vibrating microelectrode system for the quantification of K+, H+, and Ca2+fluxes in maize roots and maize suspension cells

Leon V. Kochian, Jon E. Shaff, Wiel M. Kühtreiber, Lionel F. Jaffe and William J. Lucas

Journal:

Year:

1992

Language:

english

File:

PDF, 1.80 MB

english, 1992

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